{
  "_id": "6a10183dacfb0bcc41c855a7",
  "Package": "ThresholdROC",
  "Type": "Package",
  "Title": "Optimum Threshold Estimation",
  "Version": "2.9.6",
  "Date": "2026-05-14",
  "Authors@R": "c(person(\"Sara\", \"Perez-Jaume\", email = \"spjaume@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-9805-4810\")),\nperson(\"Natalia\", \"Pallares\", role = \"aut\", comment = c(ORCID = \"0000-0002-1462-379X\")),\nperson(\"Konstantina\", \"Skaltsa\", role = \"aut\"))",
  "Description": "Functions that provide point and interval estimations of\noptimum thresholds for continuous diagnostic tests. The\nmethodology used is based on minimizing an overall cost\nfunction in the two- and three-state settings. We also provide\nfunctions for sample size determination and estimation of\ndiagnostic accuracy measures. We also include graphical tools.\nThe statistical methodology used here can be found in\nPerez-Jaume et al (2017) <doi:10.18637/jss.v082.i04> and in\nSkaltsa et al (2010, 2012) <doi:10.1002/bimj.200900294>,\n<doi:10.1002/sim.4369>.",
  "License": "GPL (>= 2)",
  "LazyData": "TRUE",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-15 00:15:58 UTC",
    "User": "root"
  },
  "Author": "Sara Perez-Jaume [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-9805-4810>), Natalia Pallares\n[aut] (ORCID: <https://orcid.org/0000-0002-1462-379X>),\nKonstantina Skaltsa [aut]",
  "Maintainer": "Sara Perez-Jaume <spjaume@gmail.com>",
  "Repository": "https://spjaume.r-universe.dev",
  "Date/Publication": "2026-05-14 23:14:12 UTC",
  "RemoteUrl": "https://github.com/cran/ThresholdROC",
  "RemoteRef": "HEAD",
  "RemoteSha": "68755a3ca16917c29ca82f6578fea940e37a19eb",
  "MD5sum": "9b03cf502a2e1ca71abb0e4d7250369d",
  "_user": "spjaume",
  "_type": "src",
  "_file": "ThresholdROC_2.9.6.tar.gz",
  "_fileid": "c922eac8d4b314897ef2dc8f4338bcc4646e50feb79910f9e1b3c6ab7cd33adb",
  "_filesize": 252384,
  "_sha256": "c922eac8d4b314897ef2dc8f4338bcc4646e50feb79910f9e1b3c6ab7cd33adb",
  "_created": "2026-05-15T00:15:58.000Z",
  "_published": "2026-05-22T08:47:57.422Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77346653028,
      "time": 136,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7007575432"
    },
    {
      "job": 77346653154,
      "time": 150,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7007578872"
    },
    {
      "job": 77346653099,
      "time": 105,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7007569856"
    },
    {
      "job": 77346653524,
      "time": 98,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7007568787"
    },
    {
      "job": 77346652845,
      "time": 176,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7007551374"
    },
    {
      "job": 77346652580,
      "time": 87,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156501724"
    },
    {
      "job": 77346653100,
      "time": 98,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7007568644"
    },
    {
      "job": 77346653111,
      "time": 83,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7007566300"
    },
    {
      "job": 77346653190,
      "time": 122,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7007573237"
    }
  ],
  "_buildurl": "https://github.com/r-universe/spjaume/actions/runs/25893026734",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/ThresholdROC",
  "_commit": {
    "id": "68755a3ca16917c29ca82f6578fea940e37a19eb",
    "author": "Sara Perez-Jaume <spjaume@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 2.9.6\n",
    "time": 1778800452
  },
  "_maintainer": {
    "name": "Sara Perez-Jaume",
    "email": "spjaume@gmail.com",
    "login": "spjaume",
    "uuid": 171269121,
    "orcid": "0000-0002-9805-4810"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.1",
      "role": "Depends"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "numDeriv",
      "role": "Imports"
    },
    {
      "package": "pROC",
      "role": "Imports"
    },
    {
      "package": "ks",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [
    {
      "week": "2025-34",
      "n": 1
    },
    {
      "week": "2026-20",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "2.9.5",
      "date": "2025-08-21"
    },
    {
      "name": "2.9.6",
      "date": "2026-05-14"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "spjaume",
      "count": 18,
      "uuid": 171269121
    }
  ],
  "_userbio": {
    "uuid": 171269121,
    "type": "user",
    "name": "spjaume"
  },
  "_downloads": {
    "count": 647,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ThresholdROC"
  },
  "_searchresults": 36,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/ThresholdROC.html",
    "manual.pdf"
  ],
  "_realowner": "spjaume",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2011-12-08"
    },
    {
      "version": "2.0",
      "date": "2015-06-16"
    },
    {
      "version": "2.1",
      "date": "2015-07-12"
    },
    {
      "version": "2.2",
      "date": "2015-11-12"
    },
    {
      "version": "2.3",
      "date": "2015-12-14"
    },
    {
      "version": "2.4",
      "date": "2017-07-31"
    },
    {
      "version": "2.5",
      "date": "2017-08-01"
    },
    {
      "version": "2.6",
      "date": "2017-11-25"
    },
    {
      "version": "2.7",
      "date": "2019-02-26"
    },
    {
      "version": "2.8",
      "date": "2020-01-08"
    },
    {
      "version": "2.8.2",
      "date": "2020-03-03"
    },
    {
      "version": "2.8.3",
      "date": "2020-09-28"
    },
    {
      "version": "2.9.0",
      "date": "2021-07-30"
    },
    {
      "version": "2.9.1",
      "date": "2023-04-11"
    },
    {
      "version": "2.9.2",
      "date": "2023-08-29"
    },
    {
      "version": "2.9.3",
      "date": "2024-03-21"
    },
    {
      "version": "2.9.4",
      "date": "2024-04-12"
    },
    {
      "version": "2.9.5",
      "date": "2025-08-21"
    },
    {
      "version": "2.9.6",
      "date": "2026-05-14"
    }
  ],
  "_exports": [
    "diagnostic",
    "plotCostROC",
    "secondDer2",
    "secondDer3",
    "SS",
    "thres2",
    "thres3",
    "thresTH2",
    "thresTH3"
  ],
  "_datasets": [
    {
      "name": "AD",
      "title": "Alzheimer's disease data",
      "object": "AD",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "Tau",
        "Status"
      ],
      "rows": 98,
      "table": true,
      "tojson": true
    },
    {
      "name": "chemo",
      "title": "Response to chemotherapy data",
      "object": "chemo",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "SUV",
        "resp"
      ],
      "rows": 50,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "AD",
      "title": "Alzheimer's disease data",
      "topics": [
        "AD"
      ]
    },
    {
      "page": "chemo",
      "title": "Response to chemotherapy data",
      "topics": [
        "chemo"
      ]
    },
    {
      "page": "diagnostic",
      "title": "Diagnostic accuracy measures of binary diagnostic tests",
      "topics": [
        "diagnostic"
      ]
    },
    {
      "page": "lines-thres2",
      "title": "Add threshold lines to a plot (two-state setting)",
      "topics": [
        "lines.thres2"
      ]
    },
    {
      "page": "lines-thres3",
      "title": "Add threshold lines to a plot (three-state setting)",
      "topics": [
        "lines.thres3"
      ]
    },
    {
      "page": "plot-thres2",
      "title": "Threshold and density plot (two-state setting)",
      "topics": [
        "plot.thres2"
      ]
    },
    {
      "page": "plot-thres3",
      "title": "Thresholds and density plot (three-state setting)",
      "topics": [
        "plot.thres3"
      ]
    },
    {
      "page": "plotCostROC",
      "title": "Plot cost function and ROC curve",
      "topics": [
        "plotCostROC"
      ]
    },
    {
      "page": "secondDer2",
      "title": "Second partial derivative of the cost function (two-state setting)",
      "topics": [
        "secondDer2"
      ]
    },
    {
      "page": "secondDer3",
      "title": "Second partial derivative of the cost function (three-state setting)",
      "topics": [
        "secondDer3"
      ]
    },
    {
      "page": "SS",
      "title": "Sample size estimation (two-state setting)",
      "topics": [
        "SS"
      ]
    },
    {
      "page": "thres2",
      "title": "Threshold point estimation and confidence intervals (two-state setting)",
      "topics": [
        "thres2"
      ]
    },
    {
      "page": "thres3",
      "title": "Threshold point estimation and confidence intervals (three-state setting)",
      "topics": [
        "thres3"
      ]
    },
    {
      "page": "ThresholdROC-package",
      "title": "Optimum threshold estimation based on cost function in a two- and three- state settings",
      "topics": [
        "ThresholdROC-package",
        "ThresholdROC"
      ]
    },
    {
      "page": "thresTH2",
      "title": "Population-based threshold calculation (two-state setting)",
      "topics": [
        "thresTH2"
      ]
    },
    {
      "page": "thresTH3",
      "title": "Population-based threshold calculation (three-state setting)",
      "topics": [
        "thresTH3"
      ]
    }
  ],
  "_rundeps": [
    "FNN",
    "kernlab",
    "KernSmooth",
    "ks",
    "lattice",
    "MASS",
    "Matrix",
    "mclust",
    "mgcv",
    "multicool",
    "mvtnorm",
    "nlme",
    "numDeriv",
    "pracma",
    "pROC",
    "Rcpp"
  ],
  "_score": 2.635483746814912,
  "_indexed": true,
  "_nocasepkg": "thresholdroc",
  "_universes": [
    "spjaume"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.9.6",
      "date": "2026-05-15T00:18:03.000Z",
      "distro": "noble",
      "commit": "68755a3ca16917c29ca82f6578fea940e37a19eb",
      "fileid": "d01ad230ee4c01d49d9ce71420891d4eca8b16d2323e3f4dc9f733738cfcc739",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spjaume/actions/runs/25893026734"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.9.6",
      "date": "2026-05-15T00:18:23.000Z",
      "distro": "noble",
      "commit": "68755a3ca16917c29ca82f6578fea940e37a19eb",
      "fileid": "8c665228f69d16541b835d26e250569a1b32ecdefe144e8d030904060e978534",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spjaume/actions/runs/25893026734"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.9.6",
      "date": "2026-05-15T00:17:43.000Z",
      "commit": "68755a3ca16917c29ca82f6578fea940e37a19eb",
      "fileid": "9aebefe9811eb78c2123e27ab649d05525617a0a2a338c66a79696d5641a211c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spjaume/actions/runs/25893026734"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.9.6",
      "date": "2026-05-15T00:17:40.000Z",
      "commit": "68755a3ca16917c29ca82f6578fea940e37a19eb",
      "fileid": "9d97dea3168a524e528ae52c6fe8ba9b98a5eb88a0e6ce228e285b860b841095",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spjaume/actions/runs/25893026734"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.9.6",
      "date": "2026-05-15T00:17:19.000Z",
      "commit": "68755a3ca16917c29ca82f6578fea940e37a19eb",
      "fileid": "2a4b41270f12b66588e75343882b65f3db4396186750fd02ac2ba2d23c0c281c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spjaume/actions/runs/25893026734"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.9.6",
      "date": "2026-05-15T00:17:10.000Z",
      "commit": "68755a3ca16917c29ca82f6578fea940e37a19eb",
      "fileid": "2460e88c8d67064fd2aa00ab939492145a944398fbb959b44130c56964fda29d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spjaume/actions/runs/25893026734"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.9.6",
      "date": "2026-05-15T00:17:50.000Z",
      "commit": "68755a3ca16917c29ca82f6578fea940e37a19eb",
      "fileid": "e43f30fa4f6ed69d52a72daa4375249f2f98ee95c4a3adb6b4af944da04ff9a2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spjaume/actions/runs/25893026734"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.9.6",
      "date": "2026-05-22T08:47:42.000Z",
      "commit": "68755a3ca16917c29ca82f6578fea940e37a19eb",
      "fileid": "de3db03cb095a5ca82667e6123f59445c014589895b74d459fdc88ef685bb14f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/spjaume/actions/runs/25893026734"
    }
  ]
}